encodeNstOrderShape

A number indicating n-st order shape encoding

A matrix containing DNAshape prediction result

shapeMatrix

A character name of shape (MGW, Roll, ProT, HelT) features

shapeType


Encode n-st order shape features
DNAshapeR can be used to generate feature vectors for a user-defined model.
The model can be a shape model. There are four structural parameters
including MGW, Roll, ProT and HelT. The second order shape features are
product terms of values for the same category of shape features at adjacent
positions.


DNAhapeR is an R/BioConductor package for ultra-fast,
high-throughput predictions of DNA shape features.
The package allows to predict,
visualize and encode DNA shape features
for statistical learning.

TsuPei Chiu

DNAshapeR

High-throughput prediction of DNA shape features

encodeNstOrderShape function

Encode n-st order shape features
DNAshapeR can be used to generate feature vectors for a user-defined model.
The model can be a shape model. There are four structural parameters
including MGW, Roll, ProT and HelT. The second order shape features are
product terms of values for the same category of shape features at adjacent
positions.

Encode n-st order shape features
DNAshapeR can be used to generate feature vectors for a user-defined model.
The model can be a shape model. There are four structural parameters
including MGW, Roll, ProT and HelT. The second order shape features are
product terms of values for the same category of shape features at adjacent
positions.

Description

Usage

Arguments

Value