DNAtools (version 0.1-8)

print.dbOptim: Prints the results from optim.relatedness()

Description

Prints the evaluated functions for the object function, best estimate of alpha and possibly list of variances.

Usage

## S3 method for class 'dbOptim':
print(x,var.list=FALSE,...)

Arguments

x

Object returned by optim.relatedness()

var.list

Logical. Whether the (long) list of variance components should be printed to the screen.

...

...

Value

• A dataframe with [theta,value] and a vector of fitted alpha parameters

Details

Prints the summary details of the fit

See Also

optim.relatedness

Examples

## Simulate some allele frequencies:
  freqs <-  replicate(10, { g = rgamma(n=10,scale=4,shape=3); g/sum(g)},
              simplify=FALSE)
  ## Load the sample database:
  data(dbExample)
  obs <- dbCompare(dbExample,trace=FALSE)$m
  C3 <- optim.relatedness(obs,theta0=0.0,theta1=0.03,probs=freqs,
          objFunction="C3",max.bisect=30,trace=TRUE)
  print(C3)