DNAtools (version 0.2-5)

print.dbOptim: Prints the results from optim.relatedness()

Description

Prints the evaluated functions for the object function, best estimate of alpha and possibly list of variances.

Usage

# S3 method for dbOptim
print(x, var.list = FALSE, ...)

Value

A dataframe with [theta,value] and a vector of fitted alpha parameters

Arguments

x

Object returned by optim.relatedness()

var.list

Logical. Whether the (long) list of variance components should be printed to the screen.

...

...

Author

James Curran and Torben Tvedebrink

Details

Prints the summary details of the fit

See Also

optim.relatedness

Examples

  if (FALSE) {
  ## Simulate some allele frequencies:
  freqs <-  replicate(10, { g = rgamma(n=10,scale=4,shape=3); g/sum(g)},
              simplify=FALSE)
  ## Load the sample database:
  data(dbExample)
  obs <- dbCompare(dbExample,trace=FALSE)$m
  C3 <- optim.relatedness(obs,theta0=0.0,theta1=0.03,probs=freqs,
          objFunction='C3',max.bisect=30,trace=TRUE)
  print(C3)
  }