The markov property means that conditional on endpoints, each interval of a markov chain is independent of the others. For this reason computations are often done on intervals.
# S3 method for CTMC_PO_1
CTMCPO2indepIntervals(partialDat)
# S3 method for CTMC_PO_many
CTMCPO2indepIntervals(partialDat)CTMC_PO_1 or CTMC_PO_many
This function converts data into a nx3 matrix where the first column is the starting state, the second is the ending state and the third is the length of time the interval spanned. No distinction is made between data from "separate" units or separate intervals from the same markov chain.