DOSE (version 2.10.6)

enricher_internal: enrich.internal

Description

interal method for enrichment analysis

Usage

enricher_internal(gene, pvalueCutoff, pAdjustMethod = "BH", universe, minGSSize = 10, maxGSSize = 500, qvalueCutoff = 0.2, USER_DATA)

Arguments

gene

a vector of entrez gene id.

pvalueCutoff

Cutoff value of pvalue.

pAdjustMethod

one of "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none"

universe

background genes

minGSSize

minimal size of genes annotated by Ontology term for testing.

maxGSSize

maximal size of each geneSet for analyzing

qvalueCutoff

cutoff of qvalue

USER_DATA

ontology information

Value

A enrichResult instance.

Details

using the hypergeometric model