gseaResult-class

gseahResult-class

plot,gseaResult-method

show,gseaResult-method

summary,gseaResult-method


Class "gseaResult"
This class represents the result of GSEA analysis


classes

This package implements five methods proposed by
Resnik, Schlicker, Jiang, Lin and Wang respectively
for measuring semantic similarities among DO terms and
gene products. Enrichment analyses including hypergeometric
model and gene set enrichment analysis are also implemented
for discovering disease associations of high-throughput
biological data.

Guangchuang Yu

DOSE

Disease Ontology Semantic and Enrichment analysis

gseaResult-class function

 <dl>
<dt><code>result</code></dt><dd>GSEA anaysis</dd> <dt><code>organism</code></dt><dd>organism</dd> <dt><code>setType</code></dt><dd>setType</dd> <dt><code>geneSets</code></dt><dd>geneSets</dd> <dt><code>geneList</code></dt><dd>order rank geneList</dd> <dt><code>keytype</code></dt><dd>ID type of gene</dd> <dt><code>permScores</code></dt><dd>permutation scores</dd> <dt><code>params</code></dt><dd>parameters</dd> </dl>

Slots

Class "gseaResult"
This class represents the result of GSEA analysis

gseaResult-class: Class "gseaResult" This class represents the result of GSEA analysis

Description

Arguments

Slots

See Also