S3method.network: [S3 methods] for `cor_net()`, `BNs_dag()`, and `DPI_dag()`.

Description

Transform qgraph into ggplot
- plot(cor.net)
- plot(bns.dag)
- plot(dpi.dag)
Plot network results
- print(cor.net)
- print(bns.dag)
- print(dpi.dag)

Usage

# S3 method for cor.net
plot(x, scale = 1.2, ...)
# S3 method for cor.net
print(x, scale = 1.2, file = NULL, width = 6, height = 4, dpi = 500, ...)
# S3 method for bns.dag
plot(x, algorithm, scale = 1.2, ...)
# S3 method for bns.dag
print(
  x,
  algorithm = names(x),
  scale = 1.2,
  file = NULL,
  width = 6,
  height = 4,
  dpi = 500,
  ...
)
# S3 method for dpi.dag
plot(
  x,
  k = min(x$DPI$k.cov),
  show.label = TRUE,
  digits.dpi = 2,
  faded.dpi = FALSE,
  faded.dpi.limit = c(0, 0.25),
  color.dpi.insig = "#EEEEEEEE",
  scale = 1.2,
  ...
)
# S3 method for dpi.dag
print(
  x,
  k = min(x$DPI$k.cov),
  show.label = TRUE,
  digits.dpi = 2,
  faded.dpi = FALSE,
  faded.dpi.limit = c(0, 0.25),
  color.dpi.insig = "#EEEEEEEE",
  scale = 1.2,
  file = NULL,
  width = 6,
  height = 4,
  dpi = 500,
  ...
)

Value

Return a ggplot object that can be further modified and used in ggplot2::ggsave() and cowplot::plot_grid().

Arguments

x: Object (class cor.net / bns.dag / dpi.dag) returned from cor_net() / BNs_dag() / DPI_dag().
scale: Scale the grob object of qgraph on the ggplot canvas. Defaults to 1.2.
...: Other arguments (currently not used).
file: File name of saved plot (".png" or ".pdf").
width, height: Width and height (in inches) of saved plot. Defaults to 6 and 4.
dpi: Dots per inch (figure resolution). Defaults to 500.
algorithm: [For bns.dag] Algorithm(s) to display. Defaults to plot the finally integrated DAG from BN results for each algorithm in x.
k: [For dpi.dag] A single value of k.cov to produce the DPI(k) DAG. Defaults to min(x$DPI$k.cov).
show.label: [For dpi.dag] Show labels of partial correlations, DPI(k), and their significance on edges. Defaults to TRUE.
digits.dpi: [For dpi.dag] Number of decimal places of DPI values displayed on DAG edges. Defaults to 2.
faded.dpi: [For dpi.dag] Transparency of edges according to the value of DPI. Defaults to FALSE.
faded.dpi.limit: [For dpi.dag] Lower and upper limits of abs(DPI) for "00" and "FF" transparency of edges. Defaults to c(0, 0.25).
color.dpi.insig: [For dpi.dag] Edge color for insignificant DPIs. Defaults to "#EEEEEEEE" (faded light grey).