DR.SC (version 3.7)

readscRNAseq: Read the scRNAseq data measured on scRNA sequencing platform

Description

Read the single cell RNA sequencing data measured on scRNA sequencing platform as a Seurat object.

Usage

readscRNAseq(mtx, cells, features, ...)

Value

return a Seurat object including expression matrix.

Arguments

mtx

a string, ame or remote URL of the mtx file

cells

a string, Name or remote URL of the cells/barcodes file

features

a string, Name or remote URL of the features/genes file

...

the arguments passing to ReadMtx

Author

Wei Liu

Details

Nothing

References

None

See Also

None

Examples

if (FALSE) {
  ### set the file directory, then read it.
  seu <- readscRNAseq(mtx="GSM3755564_16_Liver_Treg_matrix.mtx.gz",
                       features='GSM3755564_16_Liver_Treg_genes.tsv.gz',
                       cells='GSM3755564_16_Liver_Treg_barcodes.tsv.gz' )
  seu
  }