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DRviaSPCN (version 0.1.5)

Drug Repurposing in Cancer via a Subpathway Crosstalk Network

Description

A systematic biology tool was developed to repurpose drugs via a subpathway crosstalk network. The operation modes include 1) calculating centrality scores of SPs in the context of gene expression data to reflect the influence of SP crosstalk, 2) evaluating drug-disease reverse association based on disease- and drug-induced SPs weighted by the SP crosstalk, 3) identifying cancer candidate drugs through perturbation analysis. There are also several functions used to visualize the results.

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Version

Install

install.packages('DRviaSPCN')

Monthly Downloads

227

Version

0.1.5

License

GPL (>= 2)

Maintainer

Junwei Han

Last Published

January 9th, 2025

Functions in DRviaSPCN (0.1.5)

GetExample

Get example data
plotSPW

Plot subpathway network graph
getDEscore

Calculating Log2 Fold Change of genes
PackageLoaded

PackageLoaded
Optimaldrugs

Identifying the optimal drugs
Drug2SPheatmap

Plot a heat map of the subpathways activity regulated by drugs
envData

An environment variable which includes some example data
Disease2SPheatmap

Plot a heat map of the subpathways activity regulated by disease
CalCentralityScore

Calculating eigenvector centrality of subpathways