Mm.reliable


Ensembl gene IDs, that passed certain criteria among the Mus Musculus Doelken et al. DTA experiment to be considered valid for parameter estimation. For details, see vignette.


datasets

Dynamic Transcriptome Analysis (DTA) can monitor the cellular response to perturbations with higher sensitivity and temporal resolution than standard transcriptomics. The package implements the underlying kinetic modeling approach capable of the precise determination of synthesis- and decay rates from individual microarray or RNAseq measurements.

Bjoern Schwalb

Dynamic Transcriptome Analysis

Mm.reliable function

Vector of Ensembl gene IDs that can be passed to <code>DTA.estimate</code> for parameter estimation.

Format

Doelken, L., Ruzsics, Z., Raedle, B., Friedel, C. C., Zimmer, R., Mages, J., Hoffmann, R., Dickinson, P., Forster, T., Ghazal, P., & Koszinowski, U. H. (2008). High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14(9), 1959-1972.

Source

Ensembl gene IDs, that passed certain criteria among the Mus Musculus Doelken et al. DTA experiment to be considered valid for parameter estimation. For details, see vignette.

Mm.reliable: Gene identifiers valid for parameter estimation from the Mus Musculus Doelken et al. DTA experiment.

Description

Usage

Arguments

Format

Source