Sc.datamat.dynamic


This matrix contains the RNA intensity values for each gene across each RNA fraction and their replicate measurements of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al.


datasets

Dynamic Transcriptome Analysis (DTA) can monitor the cellular response to perturbations with higher sensitivity and temporal resolution than standard transcriptomics. The package implements the underlying kinetic modeling approach capable of the precise determination of synthesis- and decay rates from individual microarray or RNAseq measurements.

Bjoern Schwalb

Dynamic Transcriptome Analysis

Sc.datamat.dynamic function

The column names of the matrix give the cel-file name and the row names the Ensembl gene IDs.

Format

C. Miller, B. Schwalb, K. Maier, D. Schulz, S. Duemcke, B. Zacher, A. Mayer, J. Sydow, L. Marcinowski, L. Doelken, D. E. Martin, A. Tresch, and P. Cramer. Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol, 7:458, 2011.

Source

This matrix contains the RNA intensity values for each gene across each RNA fraction and their replicate measurements of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al.

Sc.datamat.dynamic: Gene expression profiles of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al.

Description

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