Sc.ensg.reliable


Ensembl gene IDs, that passed certain criteria among the Saccharomyces Cerevisiae Sun et al. cDTA experiment to be considered valid for parameter estimation. For details, see Sun et al (Materials and Methods).


datasets

Dynamic Transcriptome Analysis (DTA) can monitor the cellular response to perturbations with higher sensitivity and temporal resolution than standard transcriptomics. The package implements the underlying kinetic modeling approach capable of the precise determination of synthesis- and decay rates from individual microarray or RNAseq measurements.

Bjoern Schwalb

Dynamic Transcriptome Analysis

Sc.ensg.reliable function

Vector of Ensembl gene IDs that can be passed to <code>DTA.estimate</code> for parameter estimation.

Format

M. Sun, B. Schwalb, D. Schulz, N. Pirkl, L. Lariviere, K. Maier, A. Tresch, P. Cramer. Mutual feedback between mRNA synthesis and degradation buffers transcript levels in a eukaryote. Under review.

Source

Ensembl gene IDs, that passed certain criteria among the Saccharomyces Cerevisiae Sun et al. cDTA experiment to be considered valid for parameter estimation. For details, see Sun et al (Materials and Methods).

Sc.ensg.reliable: Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Sun et al. cDTA experiment.

Description

Usage

Arguments

Format

Source