Sp.tnumber


The amount of thymines in the cDNA of each transcript of all Schizosaccharomyces Pombe Ensembl transcript IDs (ORF identifier), to assess the uridine-dependent labeling bias and eventually correct for it.


datasets

Dynamic Transcriptome Analysis (DTA) can monitor the cellular response to perturbations with higher sensitivity and temporal resolution than standard transcriptomics. The package implements the underlying kinetic modeling approach capable of the precise determination of synthesis- and decay rates from individual microarray or RNAseq measurements.

Bjoern Schwalb

Dynamic Transcriptome Analysis

Sp.tnumber function

Vector gives the number of thymines in the cDNA (uridine residues in RNA) of each Ensembl transcript ID.

Format

E. Birney, D. Andrews, M. Caccamo, Y. Chen, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, X. M. Fernandez-Suarez, P. Flicek, S. Graef, M. Hammond, J. Herrero, K. Howe, V. Iyer, K. Jekosch, A. Kaehaeri, A. Kasprzyk, D. Keefe, F. Kokocinski, E. Kulesha, D. London, I. Longden, C. Melsopp, P. Meidl, B. Overduin, A. Parker, G. Proctor, A. Prlic, M. Rae, D. Rios, S. Redmond, M. Schuster, I. Sealy, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, A. Stabenau, J. Stalker, S. Trevanion, A. Ureta-
Vidal, J. Vogel, S. White, C.Woodwark, and T. J. Hubbard. Ensembl 2006. Nucleic acids research, 34(Database issue), January 2006.

Source

The amount of thymines in the cDNA of each transcript of all Schizosaccharomyces Pombe Ensembl transcript IDs (ORF identifier), to assess the uridine-dependent labeling bias and eventually correct for it.

Sp.tnumber: The amount of thymines in the cDNA of each transcript of Schizosaccharomyces Pombe.

Description

Usage

Arguments

Format

Source