DeLorean (version 1.2.2)

cov.calc.gene: Calculate covariance structure for gene over pseudotimes and test inputs.

Description

Calculate covariance structure for gene over pseudotimes and test inputs.

Usage

cov.calc.gene(dl, gene.idx, cov.fn = cov.matern.32,
  tau = tau.for.sample(dl), include.test = TRUE,
  psi = sampled.gene.param(dl, gene.idx, "psi"),
  omega = sampled.gene.param(dl, gene.idx, "omega"))

Arguments

dl

de.lorean object

gene.idx

Gene index

cov.fn

Covariance function (defaults to cov.matern.32)

tau

The pseudotimes to use

include.test

Also include the pseudotimes for the test inputs

psi

Temporal variation

omega

Noise