fit.dl

Fitting method:
<ul><li>'sample': Use a Stan sampler.
    See<code><a href="/link/fit.model.sample?package=DeLorean&version=1.2.2" rd-options="" data-mini-rdoc="DeLorean::fit.model.sample">fit.model.sample</a></code>.</li><li>'vb': Use Stan ADVI variational Bayes algorithm.
    See<code><a href="/link/fit.model.v?package=DeLorean&version=1.2.2" rd-options="" data-mini-rdoc="DeLorean::fit.model.v">fit.model.v</a></code></li></ul>

method

Perform all the steps necessary to fit the model.
- prepare the data
- compile the model
- find suitable initialisations
- fit the model using the specified method (sampling or variational Bayes)
- process the posterior.

Implements the DeLorean model to estimate pseudotimes for
    single cell expression data. The DeLorean model uses a Gaussian process
    latent variable model to model uncertainty in the capture time of
    cross-sectional data.

fit.dl: Perform all the steps necessary to fit the model. - prepare the data - compile the model - find suitable initialisations - fit the model using the specified method (sampling or variational Bayes) - process the posterior.

Description

Usage

Arguments