kouno.cell.meta

kouno.expr

kouno.gene.meta

Kouno et al. investigated the transcriptional network controlling how
THP-1 human myeloid monocytic leukemia cells differentiate into
macrophages. They provide expression values for 45 genes in 960 single
cells captured across 8 distinct time points.

datasets

Implements the DeLorean model to estimate pseudotimes for
    single cell expression data. The DeLorean model uses a Gaussian process
    latent variable model to model uncertainty in the capture time of
    cross-sectional data.

John Reid

DeLorean

Estimates Pseudotimes for Single Cell Expression Data

kouno.expr function

There are three objects in this data:
<ul><li>kouno.expr A matrix of log expression values with
    no missing data. Rows are named by genes and columns are
    named by cells/samples.</li><li>kouno.gene.meta A data frame containing meta-data
    about the genes.</li><li>kouno.cell.meta A data frame containing meta-data
    about the cells</li></ul>

format

<url>http://genomebiology.com/2013/14/10/R118/abstract</url>

kouno.expr: Kouno et al. investigated the transcriptional network controlling how THP-1 human myeloid monocytic leukemia cells differentiate into macrophages. They provide expression values for 45 genes in 960 single cells captured across 8 distinct time points.

Description

Usage

Arguments

format

source