roughness.test

<p>The expression matrix including the held out genes</p>

expr.held.out

num.perms

<p>Calculate roughnesses under fit samples and also under random
permutations</p>

Implements the DeLorean model (Reid & Wernisch (2016)
<doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for
single cell expression data. The DeLorean model uses a Gaussian process
latent variable model to model uncertainty in the capture time of
cross-sectional data.

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roughness.test: Calculate roughnesses under fit samples and also under random permutations

Description

Usage

Arguments