liver_kidney


 a list containing: 
 
  1) datasets:a data drame providing the RPKM of seven mixing samples.   
  
  2) proportions: a data frame providing the fractions for liver and kidney in the mixing samples<p></p><p>  3) signatures: a data frame providing the expression values from pure liver and kidney samples
</p>

datasets

DeconSeq is an R package for deconvolution of
heterogeneous tissues based on mRNA-Seq data. It modeled
expression levels from heterogeneous cell populations in
mRNA-Seq as the weighted average of expression from different
constituting cell types and predicted cell type proportions of
single expression profiles.

Ting Gong

DeconRNASeq

Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

liver_kidney function

A list
  1) a data frame with 31979 genes' expression on the 7 mixing samples: reads.1, reads.2, reads.3, reads.4, reads.5, reads.6, reads.7 2) a martix whose rows are mixing samples' name and columns are fractions from pure live and kidney tissues 3) a data matrix with 630 expressions from pure liver and kidney tissues

Format

a list containing: 
 
  1) datasets:a data drame providing the RPKM of seven mixing samples.   
  
  2) proportions: a data frame providing the fractions for liver and kidney in the mixing samples

  3) signatures: a data frame providing the expression values from pure liver and kidney samples

liver_kidney: data objects for liver and kidney mixing samples

Description

Usage

Arguments

Format

Examples