x.signature.filtered.optimal


 A data frame providing the expression values from pure brain, muscle, lung, liver and heart samples used for the example in DeconRNA-Seq.


datasets

DeconSeq is an R package for deconvolution of
heterogeneous tissues based on mRNA-Seq data. It modeled
expression levels from heterogeneous cell populations in
mRNA-Seq as the weighted average of expression from different
constituting cell types and predicted cell type proportions of
single expression profiles.

Ting Gong

DeconRNASeq

Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

x.signature.filtered.optimal function

A martix whose rows are gene symbols and columns are RPKM expressions from pure tissues: based on the filtered signature matrix, the optimal number of genes have been selected for the deconvolution according to the condition numbers

Format

A data frame providing the expression values from pure brain, muscle, lung, liver and heart samples used for the example in DeconRNA-Seq.

x.signature.filtered.optimal: selected signatures from multi-tissues pure samples

Description

Usage

Arguments

Format

Examples