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Demerelate (version 0.8-1)

Functions to calculate relatedness on diploid genetic data

Description

Functions to calculate pairwise relatedness on diploid genetic datasets. Different estimators for relatedness can be combined with information on geographical distances. Information on heterozygosity, allele- and genotype diversity as well as genetic F-statistics are provided for each population.

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Version

Install

install.packages('Demerelate')

Monthly Downloads

39

Version

0.8-1

License

GPL (>= 2)

Maintainer

Philipp Kraemer

Last Published

December 17th, 2013

Functions in Demerelate (0.8-1)

Demerelate-package

Demerelate --- Algorithms to estimate pairwise relatedness within populations based on allele sharing

Calculation of $Fis$ empirical and bootstrapped values

Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.

Lin.reg.distance

Linear regression of empirical genetic relatedness with geographic distance.

Mendelian offpsring generator

Calculates allele and genotype frequencies

Demerelate --- Algorithms to estimate pairwise relatedness within populations based on allele sharing

Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.

Reads different types of tables and returns an object.

Calculates allele sharing rates or similarity estimators for two populations

Head function to calculate F statistics.

Calculates geographic distances.

Random pairs generator

Queller and Goodnight estimator of relatedness

Function to calculate pairwise relatedness within populations based on allele sharing.

Calculation of $F_{is}$ based on Weir and Cockerham 1984

Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.

Calculation of Fis empirical and bootstrapped values

Analysis on differences in mean relatedness based on number of loci used for calculations

Coordinates internally reference and empirical datasets and statistics

Preparation for multinomial logistic regression.