filter.by.dependencies

0th

Percentile

Filter columns (sequence positions) by dependency

Filters columns based on the average or maximum mutual information of a column to all other columns. Mutual information is normalized to to interval [0,1], where 0 corresponds to independence and 1 to perfect dependence.

Usage
filter.by.dependencies(mi.threshold, use.max = FALSE)
Arguments
mi.threshold

the minimum average or maximum mutual information required

use.max

if TRUE, the maximum and otherwise the average mutual information will be considered

Value

function that, given a DLData object, returns TRUE for every column that does exceed the specified average mutual information

Aliases
  • filter.by.dependencies
Examples
# NOT RUN {
fun <- filter.by.dependencies(mi.threshold = 0.3)
# }
Documentation reproduced from package DepLogo, version 1.0, License: GPL-3

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