getPWM

0th

Percentile

Position weight matrix from DLData object

Determines the position weight matrix from a DLData object as relative frequency of symbols in each column of the data slot.

Usage
getPWM(part)
Arguments
part

the DLData object

Value

The position weight matrix, where columns correspond to positions (columns of the DLData$data slot) and rows to symbols.

Aliases
  • getPWM
Examples
# NOT RUN {
data <- DLData(c("ACGT", "ATTA"))
getPWM(data)
# }
Documentation reproduced from package DepLogo, version 1.0, License: GPL-3

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