summary.DLData

0th

Percentile

Summarizing DLData objects

summary method for class "DLData". The summary includes the number of sequences, the consensus sequence and the number of sequences in object that match the consensus.

Usage
# S3 method for DLData
summary(object, delete.gaps = FALSE, ...)
Arguments
object

an object of class "DLData"

delete.gaps

if gaps should be removed from the consensus

...

further arguments passed to or from other methods

Value

a list with elements members containing the number of sequences, consensus containing the consensus sequences, and equal.consensus containing the number of sequences in object that are identical to consensus

Aliases
  • summary.DLData
Examples
# NOT RUN {
seqs <- read.table(system.file("extdata", "cjun.txt", package = "DepLogo"), 
    stringsAsFactors = FALSE)
data <- DLData(sequences = seqs[, 1], weights = log1p(seqs[, 2]) )
summary(data)
# }
Documentation reproduced from package DepLogo, version 1.0, License: GPL-3

Community examples

Looks like there are no examples yet.