DescTools v0.99.13

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by Andri Signorell

Tools for Descriptive Statistics

A collection of basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'camel style' was consequently applied to functions borrowed from contributed R packages as well.

Functions in DescTools

Name Description
IdentifyA Identify Points in Plot Lying within a Rectangle or Polygon
Assocs Association Measures
Agree Raw Simple And Extended Percentage Agreement
Date Create a Date from Numeric Representation
CronbachAlpha Cronbach's Coefficient Alpha
Conf Confusion Matrix And Associated Statistics
ColToHsv R Color to HSV Conversion
Desc.formula Describe Variables by Groups
CoefVar Coefficient of Variation
ColToRgb Color to RGB Conversion
Format Format Numbers and Dates
BinToDec Converts numbers from binmode, octmode or hexmode to decimal and vice versa
Atkinson Calculate the Atkinson Index
DrawArc Draw Elliptic or Circular Arc(s)
Desc.Date Describe a Date Vector
Canvas Canvas for Geometric Plotting
BinomCI Confidence Intervals for Binomial Proportions
ColToHex Convert a Color into Hex String
ConDisPairs Concordant and Discordant Pairs
GoodmanKruskalGamma Goodman Kruskal's Gamma
ConnLines Add Connection Lines to a Barplot
CollapseTable Collapse Levels of a Table
EtaSq Effect size calculations for ANOVAs
DoCall Fast Alternative To The Internal do.call
CochranArmitageTest Cochran-Armitage test for trend
BoxedText Add Text in a Box to a Plot
DegToRad Convert Degrees to Radians and vice versa
SetAlpha Add an Alpha Channel To a Color
BubbleLegend Add a Legend to a Bubble Plot
DunnTest Dunn's Test of Multiple Comparisons
CatTable Function to write a table
DrawRegPolygon Draw Regular Polygon(s)
DrawAnnulus Draw One or Several Annuli
ColorLegend Add a ColorLegend to a Plot
FindColor Get Color on a Defined Color Range
Abind Combine multi-dimensional arrays
AxisBreak Place a Break Mark on an Axis
Association measures Cramer's V, Pearson's Contingency Coefficient and Phi Coefficient Yule's Q and Y, Tschuprow's T
BoxCox Box Cox Transformation
AUC Area Under the Curve
GoodmanKruskalTauA Goodman Kruskal's Tau a
Desc.data.frame Describe a data.frame Or a List
CutQ Create a Factor Variable Using the Quantiles of a Continuous Variable
CorPolychor Polychoric Correlation
DivCoefMax Maximal value of Rao's diversity coefficient also called quadratic entropy
ClipToVect Reformat a Table in the Clipboard as Vector
Rename Change Names of a Named Object
Fibonacci Fibonacci Numbers
CartToPol Transform Cartesian to Polar/Spherical Coordinates and vice versa
CochranQTest Cochran's Q test
CohenD Cohen's Effect Size
Clockwise Calculates Begin and End Angle From a List of Given Angles in Clockwise Mode
LehmacherTest Lehmacher's Test for Marginal Homogenity
Midx Find the Midpoints of a Numeric Vector
Between, Outside Operators To Check, If a Value Lies Within Or Outside a Given Range
Desc.table Describe a n-dimensional Contingency Table
PearsonTest Pearson chi-square test for normality
OddsRatio Odds Ratio Estimation and Confidence Intervals
BartelsRankTest Bartels Rank Test
Dummy Generate Dummy Codes for a Factor
AndersonDarlingTest Anderson-Darling Test of Goodness-of-Fit
AscToChar Convert ASCII Codes to Characters and Vice Versa
LOF Local Outlier Factor
AllDuplicated Index Vector of All Values Involved in Ties
CCC Concordance Correlation Coefficient
Date Functions Basic Date Functions
BreslowDayTest Breslow-Day Test for Homogeneity of the Odds Ratios
DurbinWatsonTest Durbin-Watson Test
DescTools-package Tools for Descriptive Statistics and Exploratory Data Analysis
Closest Find the Closest Value
KendallW Kendall's Coefficient of Concordance W
Factorize Prime Factorization of Integers
HotellingsT2Test Hotelling's T2 Test
DenseRank Dense Ranks
HuberM Safe (generalized) Huber M-Estimator of Location
LogSt Started Logarithmic Transformation and Its Inverse
DrawAnnulusSector Draw a Sector of an Annulus
Desc.logical Describe a dichotomous variable
Desc.factor Describe a Factor, an Ordered Factor Or a Character Vector
ChooseColorDlg Display Color Dialog to Choose a Color
Desc.numeric Describe a numeric vector
GCD, LCM Greatest Common Divisor and Least Common Multiple
GetNewXL Create a new Excel Instance
ExpFreq Expected frequencies
Desc Describe Data
SomersDelta Somers' Delta
HighLow Return the Lowest and the Highest Values and Their Frequencies
Eps Greenhouse-Geisser And Huynh-Feldt Epsilons
DrawEllipse Draw an Ellipse
PDFManual Get PDF Manual Of a Package From CRAN
PercTable Percentage Table
PlotMatrix Scatterplot Matrix
Freq Frequency Table
Gini Gini Coefficient
KappaM Kappa for m raters
ParseSASDatalines Parse a SAS Dataline Command
HoeffD Matrix of Hoeffding's D Statistics
HexToCol Identify closest match to a color given by a hexadecimal string
PartCor Find the Correlations for a Set x of Variables With Set y Removed
FctArgs Retrieve a Functions' Arguments
PlotECDF Empirical Cumulative Distribution Function
PlotHorizBar Plot Horizontal Bars
PageTest Exact Page Test for Ordered Alternatives
KrippAlpha Krippendorff's Alpha Reliability Coefficient
GTest G-Test for Count Data
Coalesce Return the First Element Not Being NA
Mar Set Plot Margins
DrawCircle Draw a Circle
IsDate Check if an Object is of Type Date
PoissonCI Poisson Confidence Interval
Keywords List valid Keywords for R man pages
Trim Trim a Vector
StrLeft, StrRight Returns the Left Part Or the Right Part Of a String
IsValidWrd Check Word Pointer
GiniSimpson Compute Gini-Simpson Coefficient
Lc Lorenz Curve
PlotDesc Display descriptive plots
GetNewWrd Create a new Word Instance
CohenKappa Cohen's Kappa and Weighted Kappa
WoolfTest Woolf Test
ColToGrey Convert Colors to Grey/Grayscale
SampleTwins Sample Twins
Desc.integer Describe an integer variable
IsEuclid Is a Distance Matrix Euclidean?
PlotTernary Ternary or Triangular Plots.
Exec Execute a Command Given As String
Desc.flags Describe a Set of Dichotomous Variables
PlotDot Cleveland's Dot Plots
FixToTab Text to Table
Ray Compact Information About the Columns of a Data Frame
GetCurrWrd Get a Handle to a Running Word Instance
FisherZ Fisher r to z and z to r and confidence intervals
SignTest Sign Test
MeanSE Standard error of mean
LOCF Last Observation Carried Forward
Strata Stratified sampling
PlotMarDens Scatterplot with Marginal Densities
SpreadOut Spread Out a Vector of Numbers To a Minimum Interval
KendallTauB Kendall tau-b
Extremes Kth Smallest/Largest Values
Logit Generalized Logit and Inverse Logit function
TukeyBiweight Calculate Tukey's Biweight Robust Mean
Frac Fractional Part and Maximal Digits of a Numeric Value
ImportDlg Get Path of a Data File to Be Opened
PlotMultiDens Plot Multiple Density Curves
MeanDiffCI Confidence Interval For Difference of Means
PlotLinesA Plot Lines
identify.formula Identify points in a plot using a formula.
LeveneTest Levene's Test for Homogeneity of Variance
DivCoef Rao's diversity coefficient also called quadratic entropy
Ndec Count Decimal Places of a Number
NPV One Period Returns, Net Present Value and Internal Rate of Return
PlotCirc Plot Circular Plot
Str Compactly Display the Structure of an Arbitrary R Object
PlotFdist Frequency Distribution Plot
PairApply Pairwise Calculations
DrawBand Draw Confidence Band
PlotPolar Plot Values on a Circular Grid
PlotQQ QQ-Plot for Any Distribution
MedianCI Confidence Interval for the Median
PostHocTest Post-Hoc Tests
SplitPath Split Path In Drive, Path, Filename
Stamp Date/Time/Directory Stamp the Current Plot
Gmean Geometric Mean and Standard Deviation
MixColor Compute the convex combination of two colors
ScheffeTest Scheffe Test for Pairwise and Otherwise Comparisons
StrChop Split a String in a Number of Pieces With Fixed Length
InDots Is a Specific Argument in the Dots-Arguments?
DrawBezier Draw a Bezier Curve
Some numeric checks Check a Vector For Being Numeric, Zero Or a Whole Number
Lambda Goodman Kruskal Lambda
ToLong, ToWide Reshape a Vector From Long to Wide Shape Or Vice Versa
TextToTable Converts String To a Table
StuartTauC Stuart $\tau_{c}$
PlotACF Combined Plot of a Time Series and its ACF and PACF
DescTools Palettes Some Custom Palettes
WrdInsertBookmark Insert a Bookmark, Goto Bookmark and Update the Text of a Bookmark
ZTest Z Test for Known Population Standard Deviation
%like% Like operator
Entropy Shannon Entropy and Mutual Information
d.periodic Periodic Table of Elements
Winsorize Winsorize
SiegelTukeyTest Siegel-Tukey Test For Equality In Variability
d.countries ISO 3166-1 Country Codes
WrdInsTab Insert a Table in a Word Document
median.factor Median for Ordered Factors
StrDist Compute Distances Between Strings
RelRisk Relative Risk
LillieTest Lilliefors (Kolmogorov-Smirnov) test for normality
axTicks.POSIXct Compute Axis Tickmark Locations (For POSIXct Axis)
IsOdd Checks If An Integer Is Even Or Odd
RunsTest Runs Test for Randomness
PtInPoly Point in Polygon
GetNewPP Create a new PowerPoint Instance
WrdText Insert Normal Text to Word
PlotFaces Chernoff Faces
StrAbbr String Abbreviation
split.formula Formula Interface for Split
MeanAD Mean Absolute Deviation From a Center Point
%c% Concatenates two strings without any separator.
PlotFun Plot a Function
Contrasts Pairwise Contrasts
ShapiroFranciaTest Shapiro-Francia test for normality
Vigenere Vigenere Cypher
StrPos Find Position of First Occurrence Of a String
wdConst Word VBA constants
PlotVenn Plot a Venn Diagram
NemenyiTest Nemenyi Test
StrTrim Remove Leading/Trailing Whitespace From A String
TextContrastColor Choose Textcolor Depending on Background Color
StrTrunc Truncate Strings and Add Ellipses If a String is Truncated.
XLView Use Excel as Viewer for a Data.Frame
%overlaps% Determines If And How Extensively Two Date Ranges Overlap
TheilU Theil's U index of inequality
pRevGumbel "Reverse" Gumbel Distribution Functions
day.name Build-in Constants Extension
MeanCI Confidence Interval for the Mean
JarqueBeraTest (Robust) Jarque Bera Test
VarCI Confidence Interval for the Variance
MultinomCI Confidence Intervals for Multinomial Proportions
SortMixed Order or Sort Strings With Embedded Numbers So That The Numbers Are In The Correct Order
YuenTTest Yuen t-Test For Trimmed Means
ErrBars Add Error Bars to an Existing Plot
lines.loess Add a Loess or a Spline Smoother
UncertCoef Uncertainty Coefficient
Untable Recover Original Data From Contingency Table
LsFct List Functions of a Package
FindCorr Determine highly correlated variables
WrdPlot Insert Active Plot to Word
RobRange Robust Range
SpearmanRho Spearman Rank Correlation
Primes Find all Primes Less Than n
PlotArea Create an Area Plot
PpPlot Add Slides, Insert Texts and Plots to PowerPoint
IsDichotomous Test If a Variable Contains Only Two Unique Values
ICC Intraclass Correlations (ICC1, ICC2, ICC3 From Shrout and Fleiss)
ParseFormula Parse a Formula and Create a Model Frame
LinScale Perform a linear scaling of x
SaveAsDlg Save R Objects By Choosing a File Interactively
Rev Reverse Elements of a Vector or the Rows/Columns of Matrices and Tables
Recycle Recyle a List of Elements
MHChisqTest Mantel-Haenszel Chi-Square Test
Measures of Shape Skewness and Kurtosis
XLGetRange Import Data Directly From Excel
SysInfo System Information And DescTools Options
XLDateToPOSIXct Convert Excel Dates to POSIXct
PartitionBy PartitionBy Evaluates a Function Groupwise
Zodiac Calculate the Zodiac of a Date
PlotTreemap Create a Treemap
PolarGrid Plot a Grid in Polar Coordinates
PlotMosaic Mosaic Plots
PlotPyramid Draw a Back To Back Pyramid Plot
MoveAvg Moving Average
VecRot Vector Rotation
Rotate Rotate a Geometric Structure
MosesTest Moses Test of Extreme Reactions
WrdCaption Insert Caption to Word
Permn Number and Samples for Permutations or Combinations of a Set
Outlier Outlier
WrdR Insert a R Command and It's Output in a Word Document
d.pizza Data pizza
PlotMonth Plot Monthly or Seasonal Effects Of a Univariate Time Series
WrdSetFont Set the Font in Word
HmsToSec Convert h:m:s To/From Seconds
StrIsNumeric Does a String Contain Only Numeric Data
Label Label Attribute of an Object
StrCountW Count Words in a String
LogLin Log Linear Hybrid, Generalized Log
PlotRCol Information plots
RndPairs Create Pairs of Correlated Random Numbers
RoundM Round to Multiple
PlotBubble Draw a Bubble Plot
AddMonths Add a Month to a Date
BinTree Binary Tree
WrdTable Produces a Table in Word
reorder.factor Reorder the Levels of a Factor
Xplore Interactive Graphical Data Explorer
TOne Create Table One Describing Baseline Characteristics
Benford Benford's Distribution
power.chisq.test Power Calculations for ChiSquared Tests
CramerVonMisesTest Cramer-von Mises test for normality
BoxCoxLambda Automatic Selection of Box Cox Transformation Parameter
RgbToCol Find the Named R-Color Which Is Nearest to a Given RGB-Color
CombPairs Get All Pairs out of one or two Sets of Elements
Hmean Harmonic mean
ImportFileDlg Import File In Foreign Format
PasswordDlg Password Dialog
IsPrime IsPrime Property
Recode Recode a Factor
PlotBag PlotBag, a bivariate boxplot
SelectVarDlg Select Elements of a Set by Click
UnitConv Unit Conversion
DunnettTest Dunnett's Test for Comparing Several Treatments With a Control
PlotCorr Plot a Correlation Matrix
SetRowNames Set the Row Names and Column Names in an Object
Sort Sort a Vector, a Matrix, a Table or a Data.frame
ZeroIfNA Replace NAs by 0
as.matrix.xtabs Convert xtabs To matrix
RobScale Robust Scaling With Median and Mad
StrCap Capitalize the First Letter of a String
BinomDiffCI Confidence Interval for a Difference of Binomials
DescWrd Use Word as Reporting Tool for Describing Data
Herfindahl Concentration Measures
HexToRgb Convert a Hexstring Color to a Matrix With Three Red/Green/Blue Rows
HodgesLehmann Hodges-Lehmann Estimator of Location
JonckheereTerpstraTest Exact Version of Jonckheere-Terpstra Test
Mode Mode
PlotCandlestick Plot Candlestick Chart
PlotWeb Plot a Web of Connected Points
PlotViolin Plot Violins Instead of Boxplots
StrRev Reverse a String
StrVal Extract All Numeric Values From a String
StrPad Pad a String With Justification
d.diamonds Data diamonds
StrAlign Align Strings To a Specified Character
lines.lm Add a Linear Regression Line
StuartMaxwellTest Stuart-Maxwell Marginal Homogeneity Test
%nin% Find Matching (or Non-Matching) Elements
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Details

Type Package
Date 2015-08-24
LinkingTo Rcpp, BH
License GPL (>= 2)
LazyLoad yes
LazyData yes
ByteCompile yes
NeedsCompilation yes
Additional_repositories http://www.stats.ox.ac.uk/pub/RWin/
Packaged 2015-08-24 20:50:15 UTC; Andri
Repository CRAN
Date/Publication 2015-08-25 01:07:47
depends base (>= 3.1.0) , manipulate , R (>= 3.1.0) , stats
linkingto BH
imports boot , foreign , graphics , grDevices , methods , mvtnorm , Rcpp (>= 0.11.5) , utils
suggests RDCOMClient , tcltk
Contributors Yulia Gel, David Mitchell, Stephane Champely, Leanne Chhay, Markus Huerzeler, Daniel Malter, Yongyi Min, Markus Naepflin, Michael Smithson, Yves Tille, Stefan Wellek, Detlew Labes, Friederich Leisch, George Marsaglia, John Marsaglia, Nanina Anderegg, Clint Cummins, Dong Li, Hong Ooi, Pete Hurd, Matthias Kohl, Bill Venables, Rob Hyndman, David Meyer, Dirk Eddelbuettel, Kevin Ushey, Brian Ripley, Ben Bolker, Jim Lemon, John Verzani, Tony Plate, Michael Friendly, Richard Heiberger, Torsten Hothorn, Achim Zeileis, Klaus Nordhausen, Terry Therneau, Martin Maechler, Nick Parsons, Venkatraman Seshan, Tal Galili, Sandrine Pavoine, Gregory Warnes, Max Kuhn, Jeremy VanDerWal, John Fox, Michael Dewey, Greg Snow, Charles Dupont, Peter Wolf, Werner Stahel, Arni Magnusson, Tyler Rinker, Michael Hoehle, Gabor Grothendieck, Derek Ogle, Giovanni Millo, Andri Includes R source code, or previously published by, Tomas Aragon, Antti Arppe, Adrian Baddeley, Frederico Caeiro, Daniel Chessel, Harold Doran, Stephane Dray, Jeff Enos, Claus Ekstrom, Martin Elff, Matthias Gamer, Joseph Gastwirth, Juergen Gross, Frank Harrell Jr, Christian Hoffmann, Wallace Hui, Pablo Villacorta Iglesias, Mikko Korpela, Alina Matei, Weiwen Miao, Daniel Navarro, Roland Rapold, William Revelle, Caroline Rodriguez, Mark Stevenson, Adrian Trapletti, Rand Wilcox, Daniel Wollschlaeger, Thomas Yee, Richard Farebrother

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