DescTools v0.99.15

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by Andri Signorell

Tools for Descriptive Statistics

A collection of basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'camel style' was consequently applied to functions borrowed from contributed R packages as well.

Functions in DescTools

Name Description
CronbachAlpha Cronbach's Coefficient Alpha
DegToRad Convert Degrees to Radians and vice versa
BinomDiffCI Confidence Interval for a Difference of Binomials
DivCoef Rao's diversity coefficient also called quadratic entropy
Gini Gini Coefficient
Herfindahl Concentration Measures
AUC Area Under the Curve
LogLin Log Linear Hybrid, Generalized Log
Coalesce Return the First Element Not Being NA
MHChisqTest Mantel-Haenszel Chi-Square Test
GoodmanKruskalGamma Goodman Kruskal's Gamma
BubbleLegend Add a Legend to a Bubble Plot
Gmean Geometric Mean and Standard Deviation
PageTest Exact Page Test for Ordered Alternatives
Conf Confusion Matrix And Associated Statistics
Factorize Prime Factorization of Integers
FisherZ Fisher r to z and z to r and confidence intervals
ColToGrey Convert Colors to Grey/Grayscale
BoxCox Box Cox Transformation
PlotBubble Draw a Bubble Plot
BoxCoxLambda Automatic Selection of Box Cox Transformation Parameter
HighLow Return the Lowest and the Highest Values and Their Frequencies
BartelsRankTest Bartels Rank Test
PlotDesc Display descriptive plots
AndersonDarlingTest Anderson-Darling Test of Goodness-of-Fit
PlotViolin Plot Violins Instead of Boxplots
ChooseColorDlg Display Color Dialog to Choose a Color
Extremes Kth Smallest/Largest Values
SetAlpha Add an Alpha Channel To a Color
ConDisPairs Concordant and Discordant Pairs
DrawRegPolygon Draw Regular Polygon(s)
Contrasts Pairwise Contrasts
HexToRgb Convert a Hexstring Color to a Matrix With Three Red/Green/Blue Rows
ImportFileDlg Import File In Foreign Format
AddMonths Add a Month to a Date
Desc Describe Data
Desc.Date Describe a Date Vector
DrawBand Draw Confidence Band
DoCall Fast Alternative To The Internal do.call
Desc.integer Describe an integer variable
Agree Raw Simple And Extended Percentage Agreement
DescTools-package Tools for Descriptive Statistics and Exploratory Data Analysis
AscToChar Convert ASCII Codes to Characters and Vice Versa
ICC Intraclass Correlations (ICC1, ICC2, ICC3 From Shrout and Fleiss)
Abind Combine multi-dimensional arrays
NemenyiTest Nemenyi Test
Closest Find the Closest Value
Str Compactly Display the Structure of an Arbitrary R Object
Between, Outside Operators To Check, If a Value Lies Within Or Outside a Given Range
StrCap Capitalize the First Letter of a String
CoefVar Coefficient of Variation
PlotCirc Plot Circular Plot
DrawCircle Draw a Circle
CombPairs Get All Pairs out of one or two Sets of Elements
PlotPyramid Draw a Back To Back Pyramid Plot
PlotFaces Chernoff Faces
LinScale Perform a linear scaling of x
Fibonacci Fibonacci Numbers
Benford Benford's Distribution
PartCor Find the Correlations for a Set x of Variables With Set y Removed
MeanAD Mean Absolute Deviation From a Center Point
CohenD Cohen's Effect Size
CatTable Function to write a table
DrawArc Draw Elliptic or Circular Arc(s)
CCC Concordance Correlation Coefficient
Canvas Canvas for Geometric Plotting
PlotHorizBar Plot Horizontal Bars
Desc.table Describe a n-dimensional Contingency Table
Freq Frequency Table
Ndec Count Decimal Places of a Number
PoissonCI Poisson Confidence Interval
SpreadOut Spread Out a Vector of Numbers To a Minimum Interval
ColToHsv R Color to HSV Conversion
Eps Greenhouse-Geisser And Huynh-Feldt Epsilons
Hmean Harmonic mean
FindColor Get Color on a Defined Color Range
Association measures Cramer's V, Pearson's Contingency Coefficient and Phi Coefficient Yule's Q and Y, Tschuprow's T
Dummy Generate Dummy Codes for a Factor
MosesTest Moses Test of Extreme Reactions
BarnardTest Barnard's Unconditional Test
BinToDec Converts numbers from binmode, octmode or hexmode to decimal and vice versa
Clockwise Calculates Begin and End Angle From a List of Given Angles in Clockwise Mode
IdentifyA Identify Points in Plot Lying within a Rectangle or Polygon
Untable Recover Original Data From Contingency Table
Assocs Association Measures
DrawAnnulusSector Draw a Sector of an Annulus
BinomCI Confidence Intervals for Binomial Proportions
Lc Lorenz Curve
PolarGrid Plot a Grid in Polar Coordinates
PlotFun Plot a Function
ColToRgb Color to RGB Conversion
Mode Mode
Atkinson Calculate the Atkinson Index
BoxedText Add Text in a Box to a Plot
Ray Compact Information About the Columns of a Data Frame
Date Create a Date from Numeric Representation
PlotCorr Plot a Correlation Matrix
EtaSq Effect size calculations for ANOVAs
PlotWeb Plot a Web of Connected Points
ParseSASDatalines Parse a SAS Dataline Command
DenseRank Dense Ranks
Permn Number and Samples for Permutations or Combinations of a Set
Frac Fractional Part and Maximal Digits of a Numeric Value
Recycle Recyle a List of Elements
CutQ Create a Factor Variable Using the Quantiles of a Continuous Variable
PlotCandlestick Plot Candlestick Chart
DescWrd Use Word as Reporting Tool for Describing Data
LeveneTest Levene's Test for Homogeneity of Variance
IsOdd Checks If An Integer Is Even Or Odd
PtInPoly Point in Polygon
RobScale Robust Scaling With Median and Mad
Desc.logical Describe a dichotomous variable
VarCI Confidence Interval for the Variance
PlotBag PlotBag, a bivariate boxplot
CartToPol Transform Cartesian to Polar/Spherical Coordinates and vice versa
RoundM Round to Multiple
CorPolychor Polychoric Correlation
DunnTest Dunn's Test of Multiple Comparisons
ConnLines Add Connection Lines to a Barplot
RobRange Robust Range
DunnettTest Dunnett's Test for Comparing Several Treatments With a Control
TextToTable Converts String To a Table
HuberM Safe (generalized) Huber M-Estimator of Location
Desc.data.frame Describe a data.frame Or a List
HmsToSec Convert h:m:s To/From Seconds
HotellingsT2Test Hotelling's T2 Test
GetNewWrd Create a new Word Instance
DurbinWatsonTest Durbin-Watson Test
KappaM Kappa for m raters
HodgesLehmann Hodges-Lehmann Estimator of Location
JonckheereTerpstraTest Exact Version of Jonckheere-Terpstra Test
MeanSE Standard error of mean
PercTable Percentage Table
LehmacherTest Lehmacher's Test for Marginal Homogenity
ErrBars Add Error Bars to an Existing Plot
SmoothSpline Formula Interface For smooth.spline
Entropy Shannon Entropy and Mutual Information
Outlier Outlier
GiniSimpson Compute Gini-Simpson Coefficient
JarqueBeraTest (Robust) Jarque Bera Test
Desc.flags Describe a Set of Dichotomous Variables
CohenKappa Cohen's Kappa and Weighted Kappa
reorder.factor Reorder the Levels of a Factor
SaveAsDlg Save R Objects By Choosing a File Interactively
Some numeric checks Check a Vector For Being Numeric, Zero Or a Whole Number
GCD, LCM Greatest Common Divisor and Least Common Multiple
TheilU Theil's U index of inequality
ShapiroFranciaTest Shapiro-Francia test for normality
GetNewXL Create a new Excel Instance
Exec Execute a Command Given As String
StrDist Compute Distances Between Strings
Logit Generalized Logit and Inverse Logit function
Vigenere Vigenere Cypher
StrAbbr String Abbreviation
Format Format Numbers and Dates
WoolfTest Woolf Test
Desc.formula Describe Variables by Groups
Lambda Goodman Kruskal Lambda
XLDateToPOSIXct Convert Excel Dates to POSIXct
DescTools Palettes Some Custom Palettes
CochranArmitageTest Cochran-Armitage test for trend
PlotDot Cleveland's Dot Plots
Desc.factor Describe a Factor, an Ordered Factor Or a Character Vector
StrTrunc Truncate Strings and Add Ellipses If a String is Truncated.
WrdR Insert a R Command and It's Output in a Word Document
IsDichotomous Test If a Variable Contains Only Two Unique Values
LsFct List Functions of a Package
Winsorize Winsorize
PpPlot Add Slides, Insert Texts and Plots to PowerPoint
PlotMarDens Scatterplot with Marginal Densities
Midx Find the Midpoints of a Numeric Vector
PlotMosaic Mosaic Plots
Desc.numeric Describe a numeric vector
StrVal Extract All Numeric Values From a String
IsEuclid Is a Distance Matrix Euclidean?
PlotMultiDens Plot Multiple Density Curves
KendallW Kendall's Coefficient of Concordance W
%c% Concatenates two strings without any separator.
YuenTTest Yuen t-Test For Trimmed Means
StuartMaxwellTest Stuart-Maxwell Marginal Homogeneity Test
ImportDlg Get Path of a Data File to Be Opened
PlotTreemap Create a Treemap
GTest G-Test for Count Data
FctArgs Retrieve a Functions' Arguments
IsValidWrd Check Word Pointer
MoveAvg Moving Average
LillieTest Lilliefors (Kolmogorov-Smirnov) test for normality
PlotLinesA Plot Lines
ZTest Z Test for Known Population Standard Deviation
VecRot Vector Rotation
Mar Set Plot Margins
SelectVarDlg Select Elements of a Set by Click
PlotTernary Ternary or Triangular Plots.
LogSt Started Logarithmic Transformation and Its Inverse
KrippAlpha Krippendorff's Alpha Reliability Coefficient
PairApply Pairwise Calculations
HoeffD Matrix of Hoeffding's D Statistics
%like% Like operator
MixColor Compute the convex combination of two colors
Rev Reverse Elements of a Vector or the Rows/Columns of Matrices and Tables
MultinomCI Confidence Intervals for Multinomial Proportions
PlotVenn Plot a Venn Diagram
StrIsNumeric Does a String Contain Only Numeric Data
PostHocTest Post-Hoc Tests
WrdText Insert Normal Text to Word
SomersDelta Somers' Delta
PartitionBy PartitionBy Evaluates a Function Groupwise
MeanDiffCI Confidence Interval For Difference of Means
RunsTest Runs Test for Randomness
Xplore Interactive Graphical Data Explorer
SignTest Sign Test
PlotECDF Empirical Cumulative Distribution Function
day.name Build-in Constants Extension
Measures of Shape Skewness and Kurtosis
XLGetRange Import Data Directly From Excel
IsDate Check if an Object is of Type Date
axTicks.POSIXct Compute Axis Tickmark Locations (For POSIXct Axis)
SiegelTukeyTest Siegel-Tukey Test For Equality In Variability
PlotQQ QQ-Plot for Any Distribution
Rename Change Names of a Named Object
Sort Sort a Vector, a Matrix, a Table or a Data.frame
StrTrim Remove Leading/Trailing Whitespace From A String
MedianCI Confidence Interval for the Median
StuartTauC Stuart $\tau_{c}$
PearsonTest Pearson chi-square test for normality
MeanCI Confidence Interval for the Mean
TukeyBiweight Calculate Tukey's Biweight Robust Mean
PlotMatrix Scatterplot Matrix
TextContrastColor Choose Textcolor Depending on Background Color
d.countries ISO 3166-1 Country Codes
SetRowNames Set the Row Names and Column Names in an Object
Recode Recode a Factor
WrdSetFont Set the Font in Word
UncertCoef Uncertainty Coefficient
TOne Create Table One Describing Baseline Characteristics
Strata Stratified sampling
WrdInsTab Insert a Table in a Word Document
WrdCaption Insert Caption to Word
WrdTable Produces a Table in Word
Stamp Date/Time/Directory Stamp the Current Plot
SortMixed Order or Sort Strings With Embedded Numbers So That The Numbers Are In The Correct Order
PlotRCol Information plots
StrAlign Align Strings To a Specified Character
%overlaps% Determines If And How Extensively Two Date Ranges Overlap
RndPairs Create Pairs of Correlated Random Numbers
power.chisq.test Power Calculations for ChiSquared Tests
StrCountW Count Words in a String
median.factor Median for Ordered Factors
SampleTwins Sample Twins
Trim Trim a Vector
d.pizza Data pizza
Zodiac Calculate the Zodiac of a Date
split.formula Formula Interface for Split
SplitPath Split Path In Drive, Path, Filename
wdConst Word VBA constants
StrPad Pad a String With Justification
identify.formula Identify Points In a Plot Using a Formula.
StrLeft, StrRight Returns the Left Part Or the Right Part Of a String
UnitConv Unit Conversion
ToLong, ToWide Reshape a Vector From Long to Wide Shape Or Vice Versa
ZeroIfNA Replace NAs by 0
d.whisky Classification of Scotch Single Malts
lines.loess Add a Loess or a Spline Smoother
lines.lm Add a Linear Regression Line
d.periodic Periodic Table of Elements
AllDuplicated Index Vector of All Values Involved in Ties
BreslowDayTest Breslow-Day Test for Homogeneity of the Odds Ratios
ColToHex Convert a Color into Hex String
CramerVonMisesTest Cramer-von Mises test for normality
Date Functions Basic Date Functions
DivCoefMax Maximal value of Rao's diversity coefficient also called quadratic entropy
DrawBezier Draw a Bezier Curve
KendallTauB Kendall tau-b
LOF Local Outlier Factor
Label Label Attribute of an Object
PlotFdist Frequency Distribution Plot
Primes Find all Primes Less Than n
Rotate Rotate a Geometric Structure
pRevGumbel "Reverse" Gumbel Distribution Functions
StrChop Split a String in a Number of Pieces With Fixed Length
StrPos Find Position of First Occurrence Of a String
as.matrix.xtabs Convert xtabs To matrix
d.diamonds Data diamonds
BinTree Binary Tree
CochranQTest Cochran's Q test
ExpFreq Expected frequencies
FindCorr Determine highly correlated variables
InDots Is a Specific Argument in the Dots-Arguments?
Keywords List Keywords For R Manual Pages
LOCF Last Observation Carried Forward
PlotArea Create an Area Plot
WrdPlot Insert Active Plot to Word
%nin% Find Matching (or Non-Matching) Elements
AxisBreak Place a Break Mark on an Axis
ClipToVect Reformat a Table in the Clipboard as Vector
ColorLegend Add a ColorLegend to a Plot
CollapseTable Collapse Levels of a Table
GoodmanKruskalTauA Goodman Kruskal's Tau a
GetCurrWrd Get a Handle to a Running Word Instance
HexToCol Identify closest match to a color given by a hexadecimal string
NPV One Period Returns, Net Present Value and Internal Rate of Return
PlotPolar Plot Values on a Circular Grid
PlotMiss Plot Missing Data
RelRisk Relative Risk
ScheffeTest Scheffe Test for Pairwise and Otherwise Comparisons
WrdInsertBookmark Insert a Bookmark, Goto Bookmark and Update the Text of a Bookmark
DrawAnnulus Draw One or Several Annuli
DrawEllipse Draw an Ellipse
FixToTab Text to Table
IsPrime IsPrime Property
GetNewPP Create a new PowerPoint Instance
OddsRatio Odds Ratio Estimation and Confidence Intervals
PDFManual Get PDF Manual Of a Package From CRAN
ParseFormula Parse a Formula and Create a Model Frame
PasswordDlg Password Dialog
PlotACF Combined Plot of a Time Series and its ACF and PACF
PlotMonth Plot Monthly or Seasonal Effects Of a Univariate Time Series
RgbToCol Find the Named R-Color Which Is Nearest to a Given RGB-Color
SpearmanRho Spearman Rank Correlation
StrRev Reverse a String
SysInfo System Information And DescTools Options
XLView Use Excel as Viewer for a Data.Frame
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Details

Type Package
Date 2015-10-24
LinkingTo Rcpp, BH
License GPL (>= 2)
LazyLoad yes
LazyData yes
ByteCompile yes
NeedsCompilation yes
Additional_repositories http://www.stats.ox.ac.uk/pub/RWin/
Packaged 2015-10-24 12:03:56 UTC; Andri
Repository CRAN
Date/Publication 2015-10-25 17:36:04
depends base (>= 3.1.0) , manipulate , R (>= 3.1.0) , stats
linkingto BH
imports boot , foreign , graphics , grDevices , methods , mvtnorm , Rcpp (>= 0.11.5) , utils
suggests RDCOMClient , tcltk
Contributors Yulia Gel, David Mitchell, Stephane Champely, Leanne Chhay, Markus Huerzeler, Daniel Malter, Yongyi Min, Markus Naepflin, Michael Smithson, Yves Tille, Stefan Wellek, Detlew Labes, Friederich Leisch, George Marsaglia, John Marsaglia, Nanina Anderegg, Clint Cummins, Dong Li, Hong Ooi, Pete Hurd, Matthias Kohl, Bill Venables, Rob Hyndman, David Meyer, Dirk Eddelbuettel, Kevin Ushey, Brian Ripley, Ben Bolker, Jim Lemon, John Verzani, Tony Plate, Michael Friendly, Richard Heiberger, Torsten Hothorn, Achim Zeileis, Klaus Nordhausen, Terry Therneau, Martin Maechler, Nick Parsons, Venkatraman Seshan, Tal Galili, Sandrine Pavoine, Gregory Warnes, Max Kuhn, Jeremy VanDerWal, John Fox, Michael Dewey, Greg Snow, Charles Dupont, Peter Wolf, Werner Stahel, Arni Magnusson, Tyler Rinker, Michael Hoehle, Gabor Grothendieck, Derek Ogle, Giovanni Millo, Kamil Erguler, Andri Includes R source code, or previously published by, Tomas Aragon, Antti Arppe, Adrian Baddeley, Frederico Caeiro, Daniel Chessel, Harold Doran, Stephane Dray, Jeff Enos, Claus Ekstrom, Martin Elff, Matthias Gamer, Joseph Gastwirth, Juergen Gross, Frank Harrell Jr, Christian Hoffmann, Wallace Hui, Pablo Villacorta Iglesias, Mikko Korpela, Alina Matei, Weiwen Miao, Daniel Navarro, Roland Rapold, William Revelle, Caroline Rodriguez, Mark Stevenson, Adrian Trapletti, Rand Wilcox, Daniel Wollschlaeger, Thomas Yee, Richard Farebrother

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