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DigestiveDataSets

The DigestiveDataSets package offers a comprehensive and curated collection of datasets focused on the digestive system, including the stomach, intestines, liver, pancreas, and related disorders. This package encompasses a variety of data types such as clinical trials, observational studies, experimental datasets, cohort data, and case series, providing broad coverage of gastrointestinal diseases.

Installation

You can install the DigestiveDataSets package from CRAN with the following R function:


install.packages("DigestiveDataSets")

Load the Package


library(DigestiveDataSets)

Dataset Suffixes

Each dataset in the DigestiveDataSets package uses a suffix to denote the type of R object:

  • _df: data frame

  • _tbl_df: tibble

  • _ts: time series

Example Datasets

Below are selected example datasets included in the DigestiveDataSets package:

  • digestive_cancer_survival_df: Digestive Cancer Survival Times.

  • campylobacter_infections_ts: Campylobacter Infections Time Series.

  • cholera_deaths_1849_tbl_df: Cholera Daily Deaths in England, 1849.

Example Code:


# Load the package

library(DigestiveDataSets)

# List all datasets in the package

view_datasets_digestive()

# Load dataset

data(digestive_cancer_survival_df)

# Preview the dataset

head(digestive_cancer_survival_df)

# Open in Viewer

View(digestive_cancer_survival_df)

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Version

Install

install.packages('DigestiveDataSets')

Monthly Downloads

460

Version

0.1.0

License

GPL-3

Issues

Pull Requests

Stars

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Maintainer

Renzo Caceres Rossi

Last Published

June 3rd, 2025

Functions in DigestiveDataSets (0.1.0)

gi_damage_prevention_df

Gastrointestinal Damage Prevention
helicobacter_children_tbl_df

Helicobacter pylori Infection in Preschoolers
liver_cirrhosis_prednisone_df

Prednisone vs Placebo in Liver Cirrhosis
ecoli_infections_df

E. coli Infections Time Series
intestinal_smartpill_df

SmartPill Intestinal Transit
lynch_ontario_families_df

Ontario Lynch Syndrome families
gastric_cancer_trial_df

Gastric Cancer Clinical Trial
norovirus_derbyshire_df

Norovirus Outbreak in Derbyshire
pbc_mayo_survival_df

Mayo Clinic Primary Biliary Cirrhosis
post_ercp_pancreatitis_tbl_df

Indomethacin for Post-ERCP Pancreatitis
pancreatic_cancer_df

Pancreatic Cancer Clinical Trial
weight_loss_df

Obese Patient Weight Loss Data
ibs_cam_trials_df

Studies on CAM for Irritable Bowel Syndrome
ugi_bleeding_df

H2 Antagonists in UGIB
intestinal_surgery_df

Satellite Tumors in GI Surgery
view_datasets_digestive

View Available Datasets in DigestiveDataSets
horse_colic_surgery_df

Colic Horse Surgery
crc_mirnas_pubmed_tbl_df

PubMed Data of miRNAs in Colorectal Cancer
cholera_deaths_1849_tbl_df

Cholera Daily Deaths in England, 1849
bleeding_ulcers_df

Recurrent Bleeding from Ulcers
colon_stageBC_chemo_df

Chemotherapy for Stage B/C Colon Cancer
anorexia_weight_change_df

Anorexia Weight Change
cystic_fibrosis_snps_df

Cystic Fibrosis SNP
colonoscopy_features_tbl_df

Features from Colonoscopic Video
DigestiveDataSets

DigestiveDataSets: A Curated Collection of Digestive System and Gastrointestinal Disease Datasets
digestive_cancer_survival_df

Digestive Cancer Survival Times
campylobacter_infections_ts

Campylobacter Infections Time Series