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DisHet (version 1.0.0)

Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples

Description

Model cell type heterogeneity of bulk renal cell carcinoma. The observed gene expression in bulk tumor sample is modeled by a log-normal distribution with the location parameter structured as a linear combination of the component-specific gene expressions.

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Version

Install

install.packages('DisHet')

Monthly Downloads

150

Version

1.0.0

License

GPL-2

Maintainer

Tao Wang

Last Published

May 25th, 2018

Functions in DisHet (1.0.0)

DisHet

Heterogeneity Dissection
StromaExp

Stroma (Immune) Component Gene Expression Estimation
eTME_signatures

Empirically-defined Immune Signature Genes in RCC Bulk Tumor