DiscreteFDR v1.3-4


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Multiple Testing Procedures with Adaptation for Discrete Tests

Multiple testing procedures described in the paper D<c3><b6>hler, Durand and Roquain (2018) "New FDR bounds for discrete and heterogeneous tests" <doi:10.1214/18-EJS1441>. The main procedures of the paper (HSU and HSD), their adaptive counterparts (AHSU and AHSD), and the HBR variant are available and are coded to take as input a set of observed p-values and their discrete support under the null. A function to compute such p-values and supports for Fisher's exact tests is also provided, along with a wrapper allowing to apply discrete procedures directly from contingency tables.

Functions in DiscreteFDR

Name Description
DBR [HBR-\(\lambda\)] procedure
amnesia Amnesia and other drug reactions in the MHRA pharmacovigilance spontaneous reporting system
hist.DiscreteFDR Histogram of Raw p-Values
fast.Discrete Fast application of discrete procedures
match.pvals Matching raw p-values with supports
DiscreteFDR DiscreteFDR
kernel Kernel functions
plot.DiscreteFDR Plot Method for DiscreteFDR objects
print.DiscreteFDR Printing DiscreteFDR results
summary.DiscreteFDR Summarizing Discrete FDR Results
discrete.BH [HSU], [HSD], [AHSU] and [AHSD] procedures
fisher.pvalues.support Computing discrete p-values and their support for binomial and Fisher's exact tests
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Type Package
Date 2020-02-14
License MIT + file LICENSE
Encoding UTF-8
LazyData true
RoxygenNote 7.0.2
VignetteBuilder R.rsp, knitr
LinkingTo Rcpp
NeedsCompilation yes
Packaged 2020-02-14 09:41:13 UTC; Florian
Repository CRAN
Date/Publication 2020-02-14 10:00:02 UTC

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