Implements the DivE diversity estimator. Combines multiple objects of class DiveMaster.
CombDM(dmlist)An object of class DiveMaster, i.e. a list of objects
a matrix of aggregated model scores
a list of fitsingMod objects corresponding to the list of fitted models
a matrix of scores of the fit of the models corresponding to the list of fitted models
the estimate of species richness (number of species/classes or diversity) at population size tot.pop. This is the geometric average of the models corresponding to the top-five model scores. This is recalculated based on the combined list of models
as per estimate value, but the lowest prediction amongst the models having the top-five scores. This is recalculated based on the combined list of models
as per estimate value, but the highest prediction amongst the models having the top-five scores. This is recalculated based on the combined list of models
list of original input models
number of topscoring models used for diversity estimate. This is set as the smallest m value of each of the DiveMaster objects in the list
list of objects of class DiveMaster.
Daniel J. Laydon, Aaron Sim, Charles R.M. Bangham, Becca Asquith
CombDM combines multiple objects of class DiveMaster. Function used if DivE estimation has been split into multiple, separate calls to DiveMaster.
Laydon, D. J., Melamed, A., Sim, A., Gillet, N. A., Sim, K., Darko, S., Kroll, S., Douek, D. C., Price, D., Bangham, C. R. M., Asquith, B., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014
DiveMaster
# See DiveMaster documentation for examples.
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