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R package, DrImpute

Il-Youp Kwak (ilyoup.kwak@gmail.com), with contributions from Wuming Gong.

R/DrImpute is an R package for imputing dropout events in single-cell RNA-sequencing data. It improve many statistical tools used for scRNA-seq analysis that do not account for dropout events.

installation

From CRAN :

install.packages("DrImpute")

Or, with devtools:

library(devtools)
install_github("ikwak2/DrImpute")

License

The R/DrImpute package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License, version 3, as published by the Free Software Foundation.

This program is distributed in the hope that it will be useful, but without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. See the GNU General Public License for more details.

A copy of the GNU General Public License, version 3, is available at https://www.r-project.org/Licenses/GPL-3

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Version

Install

install.packages('DrImpute')

Monthly Downloads

269

Version

1.0

License

GPL-3

Issues

Pull Requests

Stars

Forks

Maintainer

Il-Youp Kwak

Last Published

July 15th, 2017

Functions in DrImpute (1.0)

getCls

get base clustering results using SC3 based clustering methods.
preprocessSC

A function for preprocessing gene expression matrix.
DrImpute

Imputing dropout events in single-cell RNA-sequencing data.
exdata

Usoskin data