DrugSim2DR (version 0.1.2)

plotTargetheatmap: plotTargetheatmap

Description

The function "plotTargetheatmap" is used to plot a heat map of drug targets expression.

Usage

plotTargetheatmap(drugid,ExpData,label,significance=FALSE,
cluster.rows=FALSE,cluster.cols=FALSE,bk=c(-2.4,2.3),show.rownames=TRUE,
show.colnames=FALSE,ann_colors=c("#FFAA2C","#2CBADA"),col=c("#2A95FF","#FF1C1C"))

Value

A heat map of drug targets expression.

Arguments

drugid

The drugbank ID of a drug.

ExpData

A gene expression profile of interest (rows are genes, columns are samples).

label

A character vector consists of "0" and "1" which represent sample class in the gene expression profile. "0" means normal sample and "1" means disease sample.

significance

This parameter controls whether the p-value of differential expression is displayed.

cluster.rows

Logical value that represents whether row clustering is used.

cluster.cols

Logical value that represents whether col clustering is used.

bk

This parameter adjusts the range of values displayed by the color bar.

show.rownames

This parameter controls whether row names are displayed.

show.colnames

This parameter controls whether column names are displayed.

ann_colors

Vector of colors used to define groups.

col

Vector of colors used in the heatmap.

Examples

# Obtain the example data
GEP<-Gettest("GEP")
label<-Gettest("label")
# Run the function
plotTargetheatmap("DB00780",GEP,label)