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EBSEA (version 1.0.0)

filterCounts: Filter Count Data

Description

The exons are filtered based on their expression levels so that each exon has a cpm (count per million) of more than 1 in user defined percent of the samples.

Usage

filterCounts(x, noOfSamples)

Arguments

x
A numeric dataframe of counts in the sample with gene and exon number as the row names and samples as the column names
noOfSamples
Percentage of the number of samples that should have cpm greater than 1.

Value

A dataframe of filtered counts of exons

See Also

EBSEA

Examples

Run this code
data(origCounts)
res <- filterCounts(origCounts, 20)

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