EBSEA (version 1.0.0)

filterGenes: Filter Gene List

Description

The differentially expressed genes are filtered based on the FC and FDR provided by the user.The default thresholds are FC => 1.25 and fdr

Usage

filterGenes(x, fc = 1.25, fdr = 0.01)

Arguments

x

A dataframe containing the gene statistics returned by EBSEA.

fc

A fold change threshold for the genes to be filtered. Default: 1.25.

fdr

A FDR threshold for the genes to be filtered. Default: 0.01.

Value

A list containing upregulated and downregulated genes.

See Also

EBSEA

Examples

data(origCounts)
group <- c('Group1', 'Group1', 'Group1', 'Group2', 'Group2', 'Group2', 'Group2')
result <- EBSEA(origCounts, group)
filteredGenes <- filterGenes(result$GeneTable)