EBSeq (version 1.12.0)

GetMultiPP: Posterior Probability of Each Transcript

Description

'GetMultiPP' generates the Posterior Probability of being each pattern of each transcript based on the EBMultiTest output.

Usage

GetMultiPP(EBout)

Arguments

EBout

The output of EBMultiTest function.

Value

PP

The poster probabilities of being each pattern.

MAP

Gives the most likely pattern.

Patterns

The Patterns.

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

See Also

GetPPMat

Examples

data(MultiGeneMat)
MultiGeneMat.small = MultiGeneMat[201:210,]

Conditions = c("C1","C1","C2","C2","C3","C3")
PosParti = GetPatterns(Conditions)
Parti = PosParti[-3,]
MultiSize = MedianNorm(MultiGeneMat.small)

MultiOut = EBMultiTest(MultiGeneMat.small, 
	NgVector=NULL, Conditions=Conditions, 
	AllParti=Parti, sizeFactors=MultiSize, 
	maxround=5)
MultiPP = GetMultiPP(MultiOut)