EBSeq (version 1.12.0)

GetPP: Generate the Posterior Probability of each transcript.

Description

'GetPP' generates the Posterior Probability of being DE of each transcript based on the EBTest output.

Usage

GetPP(EBout)

Arguments

EBout

The output of EBTest function.

Value

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

See Also

GetPPMat

Examples

data(GeneMat)
GeneMat.small = GeneMat[c(1:10,500:550),]
Sizes = MedianNorm(GeneMat.small)
EBOut = EBTest(Data = GeneMat.small,
	Conditions = as.factor(rep(c("C1","C2"), each=5)),
	sizeFactors = Sizes, maxround = 5)
PPDE = GetPP(EBOut)
str(PPDE)
head(PPDE)