EBSeq (version 1.12.0)

GetPPMat: Posterior Probability of Transcripts

Description

'GetPPMat' generates the Posterior Probability of being each pattern of each transcript based on the EBTest output.

Usage

GetPPMat(EBout)

Arguments

EBout

The output of EBTest function.

Value

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

Examples

data(GeneMat)
GeneMat.small = GeneMat[c(500:550),]
Sizes = MedianNorm(GeneMat.small)
EBOut = EBTest(Data = GeneMat.small,
	Conditions = as.factor(rep(c("C1","C2"), each=5)),
	sizeFactors = Sizes, maxround = 5)
PP = GetPPMat(EBOut)
str(PP)
head(PP)