EBSeq (version 1.12.0)

Likefun: Likelihood Function of the NB-Beta Model

Description

'Likefun' specifies the Likelihood Function of the NB-Beta Model.

Usage

Likefun(ParamPool, InputPool)

Arguments

ParamPool

The parameters that will be estimated in EM.

InputPool

The control parameters that will not be estimated in EM.

Value

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

Examples

#x1 = c(.6,.7,.3)
#Input = matrix(rnorm(100,100,1), ncol=10)
#RIn = matrix(rnorm(100,200,1), ncol=10)
#InputPool = list(Input[,1:5], Input[,6:10], Input,
#	rep(.1,100), 1, RIn, RIn[,1:5], RIn[,6:10], 100) 
#Likefun(x1, InputPool)