EBSeq (version 1.12.0)

LikefunNBHMM: Likelihood function of the Beta-Negative Binomial HMM Model

Description

Likelihood function of the Beta-Negative Binomial HMM Model

Usage

LikefunNBHMM(ParamPool, InputPool)

Arguments

ParamPool

The parameters that will be estimated in EM.

InputPool

The control parameters that will not be estimated in EM

Value

• optimal estimates of the parameters of interest

Details

The likelihood function of the Beta-Negative Binomial HMM model used in EBSeqHMM. EBSeqHMM uses optim() function to obtain the optimal estimates that minimizes the likelihood.

Examples

data(GeneExampleData)
tmp <- GeneExampleData[1:10,]
In <- list(tmp,1,5,10,3,tmp,rep(1,15),as.factor(rep(1:5,each=3)), 10,cbind(rep(.5,10),rep(1,10),rep(2,10)))
Start <- c(1,1)
LikefunNBHMM(Start,In)