EBSeq (version 1.12.0)

PlotPattern: Visualize the patterns

Description

'PlotPattern' generates the visualized patterns before the multiple condition test.

Usage

PlotPattern(Patterns)

Arguments

Patterns

The output of GetPatterns function.

Value

A heatmap to visualize the patterns of interest.

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

Examples

Conditions = c("C1","C1","C2","C2","C3","C3")
Patterns = GetPatterns(Conditions)
PlotPattern(Patterns)