EBSeq (version 1.12.0)

f0: The Prior Predictive Distribution of being EE

Description

'f0' gives the Prior Predictive Distribution of being EE.

Usage

f0(Input, AlphaIn, BetaIn, EmpiricalR, NumOfGroups, log)

Arguments

Input

Expression Values.

AlphaIn, BetaIn, EmpiricalR

The parameters estimated from last iteration of EM.

NumOfGroups

How many transcripts within each Ng group.

log

If true, will give the log of the output.

Value

The function will return the prior predictive distribution values of being EE.

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

See Also

f1

Examples

#
#f0(matrix(rnorm(100,100,1),ncol=10), .5, .6,
#	matrix(rnorm(100,200,1),ncol=10), 100, TRUE)