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EBcoexpress (version 1.16.0)

EBcoexpress for Differential Co-Expression Analysis

Description

An Empirical Bayesian Approach to Differential Co-Expression Analysis at the Gene-Pair Level

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Version

Version

1.16.0

License

GPL (>= 2)

Maintainer

John A Dawson

Last Published

February 15th, 2017

Functions in EBcoexpress (1.16.0)

fiftyGenes

The fiftyGenes expression matrix
utilities

Basic utilities for the EBcoexpress package
priorDiagnostic

Visual diagnostic for the EBcoexpress prior
showNetwork

A function for looking at the co-expression among a small group of genes
ebCoexpressSeries

Functions to run single-study analyses
rankMyGenes

A function to rank the genes by the number of DC pairs in which they appear
initializeHP

Initializing Hyperparameters for EM
ebCoexpressMeta

A function for DC meta-analysis that combines individual study analyses
showPair

A function for looking at a pair's differential co-expression
makeMyD

A function to convert the X expression matrix into the D correlation matrix