EDCimport (version 0.5.2)

read_all_csv: Read all .csv files in a directory

Description

Read all .csv files in a directory, with labels if specified.

Usage

read_all_csv(
  path,
  ...,
  labels_from = NULL,
  clean_names_fun = NULL,
  read_fun = "guess",
  datetime_extraction = "guess",
  verbose = getOption("edc_read_verbose", 1)
)

Value

a list containing one dataframe for each .csv file in the folder, the extraction date (datetime_extraction), and a summary of all imported tables (.lookup).

Arguments

path

[character(1)]
path to the directory containing .csv files.

...

unused

labels_from

[misc]
list of path to file containing the labels.

clean_names_fun

[function]
a function to clean column names, e.g. tolower, janitor::clean_names(),...

read_fun

[function]
a function to read the files in path, e.g. read.csv(), read.csv2(),...

datetime_extraction

[dateish(1)]
the datetime of database extraction (database lock). If "guess", the datetime will be inferred from the files modification time.

verbose

[numeric(1)]
the level of verbosity

Labels file

labels_from should contain the information about column labels. It should be a data file (.csv) containing 2 columns: one for the column name and the other for its associated label. Use options(edc_col_name="xxx", edc_col_label="xxx") to specify the names of the columns.