EDCimport (version 0.6.0)

edc_patient_gridplot: Patient gridplot

Description

Draw a gridplot giving, for each patient and each dataset, whether the patient is present in the dataset. Data are drawn from get_datasets.

Usage

edc_patient_gridplot(
  sort_rows = TRUE,
  sort_cols = TRUE,
  gradient = FALSE,
  axes_flip = FALSE,
  show_grid = TRUE,
  preprocess = NULL,
  palette = c(Yes = "#00468BFF", No = "#ED0000FF"),
  datasets = get_datasets(),
  lookup = edc_lookup()
)

Value

a ggplot object

Arguments

sort_rows

whether to sort patients from "present in most datasets" to "present in least datasets"

sort_cols

whether to sort datasets from "containing the most patients" to "containing the least patients"

gradient

whether to add a color gradient for repeating measures

axes_flip

whether to flip the axes, so that patients are on the Y axis and datasets on the X axis

show_grid

whether to show the grid

preprocess

a function to preprocess the patient ID, e.g. as.numeric, or a custom function with string replacement

palette

the colors to use

datasets, lookup

internal

Examples

if (FALSE) {
  tm = read_trialmaster("path/to/archive.zip")
  load_database(db)
  edc_patient_gridplot(sort_rows=FALSE, sort_cols=FALSE)
  edc_patient_gridplot(axes_flip=TRUE, show_grid=TRUE,
                       preprocess=~str_remove(.x, "\\D*")) #remove all non-digits
}