build_coexp_GEOID

gseid

gene.list

correlation method to use, default Spearman's rho

method

string to indicate if the network should be ranked

flag


The function generates a dense coexpression network from expression data stored in 
GEO. The expression data is downloaded from GEO. Correlation coefficicents are used 
as to weight the edges of the nodes (genes). Calls <code><a rd-options="" href="/link/get_expression_matrix_from_GEO?package=EGAD&version=1.0.3" data-mini-rdoc="EGAD::get_expression_matrix_from_GEO">get_expression_matrix_from_GEO</a></code>
and <code><a rd-options="" href="/link/build_coexp_network?package=EGAD&version=1.0.3" data-mini-rdoc="EGAD::build_coexp_network">build_coexp_network</a></code>.


network

coexpression

dense

The package implements a series of highly efficient tools
to calculate functional properties of networks based on guilt
by association methods.

Sara Ballouz Developer

EGAD

Extending guilt by association by degree

build_coexp_GEOID function


The function generates a dense coexpression network from expression data stored in 
GEO. The expression data is downloaded from GEO. Correlation coefficicents are used 
as to weight the edges of the nodes (genes). Calls <code><a rd-options='' href='get_expression_matrix_from_GEO'>get_expression_matrix_from_GEO</a></code>
and <code><a rd-options='' href='build_coexp_network'>build_coexp_network</a></code>.


build_coexp_GEOID: Builds a coexpression network given a GEO ID

Description

Usage

Arguments

Value