EGRETci (version 1.0.0)

plotFluxHistBoot: Graph of annual flux, flow normalized flux, and confidence bands for flow normalized flux

Description

Uses the output of modelEstimation in the EGRET package (results in the named list eList), and the data frame CIAnnualResults (produced by EGRETci package using scripts described in the vignette) to produce a graph of annual flux, flow normalized flux, and confidence bands for flow-normalized flux. In addition to the arguments listed below, it will accept any additional arguments that are listed for the EGRET function plotFluxHist.

Usage

plotFluxHistBoot(eList, CIAnnualResults, yearStart = NA, yearEnd = NA,
  plotFlowNorm = TRUE, fluxUnit = 9, fluxMax = NA, col.pred = "green",
  printTitle = TRUE, cex.main = 1.1, ...)

Arguments

eList

named list with at least the Daily, Sample, and INFO dataframes. Created from the EGRET package, after running modelEstimation.

CIAnnualResults

data frame from ciBands (needs nBoot, probs, and blockLength attributes)

yearStart

numeric is the calendar year containing the first estimated annual value to be plotted, default is NA (which allows it to be set automatically by the data)

yearEnd

numeric is the calendar year just after the last estimated annual value to be plotted, default is NA (which allows it to be set automatically by the data)

plotFlowNorm

logical variable if TRUE flow normalized line is plotted, if FALSE not plotted

fluxUnit

number representing entry in pre-defined fluxUnit class array. printFluxUnitCheatSheet

fluxMax

number specifying the maximum value to be used on the vertical axis, default is NA (which allows it to be set automatically by the data)

col.pred

character prediction color

printTitle

logical

cex.main

numeric title scale

...

graphical parameters

Examples

library(EGRET)
eList <- Choptank_eList
CIAnnualResults <- Choptank_CIAnnualResults
plotFluxHistBoot(eList, CIAnnualResults, fluxUnit=5)

CIAnnualResults <- ciCalculations(eList, nBoot = 100, blockLength = 200)
plotFluxHistBoot(eList, CIAnnualResults, fluxUnit=5)