Learn R Programming

Ensemble of Gene Set Enrichment Analyses R Package

Author: Monther Alhamdoosh, Milica Ng and Matthew Ritchie E:m.hamdoosh@gmail.com

You can download the current stable release from this url

https://bitbucket.org/malhamdoosh/egsea/get/Stable_Release.tar.gz

Alternatively, you can install EGSEA in your local computer by typing these commands in the R console library(devtools)

install_bitbucket("malhamdoosh/egseadata", ref="Stable_Release")

install_bitbucket("malhamdoosh/egsea", ref="Stable_Release")

Note that devtools should be installed before you can run these commands.

Copy Link

Version

Version

1.0.3

License

GPL-2

Maintainer

Monther Alhamdoosh

Last Published

February 15th, 2017

Functions in EGSEA (1.0.3)

egsea.base

EGSEA Base GSE Methods
buildKEGGIdxEZID

Gene Set Collection Index from the KEGG Database
egsea.sort

EGSEA Result Sorting Options
topSets

Table of Top Gene Sets from an EGSEA Analysis
buildMSigDBIdxEZID

Gene Set Collection Indexes from the MSigDB Database
egsea.combine

EGSEA P-value Combining Options
buildGeneSetDBIdxEZID

Gene Set Collection Indexes from the GeneSetDB Database
egsea

Ensemble of Gene Set Enrichment Analyses Function
buildCustomIdxEZID

Custom Gene Set Collection Index
buildIdxEZID

Generate Gene Set Collection Indexes from the MSigDB and KEGG Databases
EGSEA-package

Ensemble of Gene Enrichment Analysis (EGSEA)
egsea.ora

Over-representation Analysis with EGSEA Reporting Capabilities
egsea.cnt

Ensemble of Gene Set Enrichment Analyses Function