MEE.data-class


MEE.data
An S4 class contains 5 slots: methylation, expression, sample information, probe
information and gene information. MEE.data class are the main input for main functions.



ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.

Lijing Yao

ELMER


Inferring Regulatory Element Landscapes and Transcription Factor
Networks Using Cancer Methylomes

MEE.data-class function

 <dl>
<dt><code>meth</code></dt><dd>A matrix of DNA methylation. Each row is one probe and each
column is one sample</dd> <dt><code>exp</code></dt><dd>A matrix of expression. Each row is one gene and each
column is one sample</dd> <dt><code>sample</code></dt><dd>A data.frame contains sample information</dd> <dt><code>probeInfo</code></dt><dd>A GRange object contains probe information</dd> <dt><code>geneInfo</code></dt><dd>A GRange object contains gene information</dd> </dl>

Slots

MEE.data
An S4 class contains 5 slots: methylation, expression, sample information, probe
information and gene information. MEE.data class are the main input for main functions.

MEE.data-class: MEE.data An S4 class contains 5 slots: methylation, expression, sample information, probe information and gene information. MEE.data class are the main input for main functions.

Description

Arguments

Slots

See Also