get450K

A character specifies the disease to download from TCGA such as BLCA

disease

A path shows where the data will be stored.

basedir


get450K is a function to download latest version of HM450K DNA methylation for 
all samples of certain cancer types from TCGA website.



ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.

Lijing Yao

ELMER


Inferring Regulatory Element Landscapes and Transcription Factor
Networks Using Cancer Methylomes

get450K function

get450K is a function to download latest version of HM450K DNA methylation for 
all samples of certain cancer types from TCGA website.

get450K: get450K to download HM40K DNA methylation data for certain cancer types from TCGA website.

Description

Usage

Arguments

Value

References