goReport

hgOver

name of txt file, by default "report.txt"

fileout

type of GO categories, by default = c("CC", "MF", "BP")

type

pack.annot

cutoff for significant pvalue, by default 0.05

pvalue

integer, minimum size for category, by default = 1

categorySize


  Create a text report with the significant probesets for each significant GO category from the result of a call to 'hyperGTest'


internal

print

We propose both a clear analysis strategy and a selection of tools to investigate microarray gene expression data. The most usual and relevant existing R functions were discussed, validated and gathered in an easy-to-use R package (EMA) devoted to gene expression microarray analysis. These functions were improved for ease of use, enhanced visualisation and better interpretation of results.

goReport: Text report from the 'hyperGTest' function

Description

Usage

Arguments

Value

Details

See Also