Compute foldchange
Distribution plots of genes expression level
Compute survival curves and test difference between the curves
Normalisation of Affymetrix expression arrays
Text report from the result of the 'hyperGTest' function for KEGG
pathway analysis
Genes selection
Kmeans and hierarchical clustering
Multiple testing correction
Microarray color palette
marty class data for Basal vs HER2 cancer type
Text report from the 'hyperGTest' function
inverse
Compute Dice distance on a data matrix
htmlheader
Create all pairwise contrasts
eval.stability.clustering
Compares several clustering methods by means of its stability.
Agglomerative hierarchical clustering
Clustering plots for one or two ways representation
Perform an Principal Component Analysis
Sample quality computation in PCA
Html report from the result of the 'hyperGTest' function
Compute Jaccard distance on a data matrix
Filter expression data
Chisq test for ordinal values
marty data
Sample and variable representation on a same graph for PCA
Test for nested ANOVA models
SAM analysis with siggenes package
Computing Multiple Wilcoxon Tests
barplot of genes expression level
Variable representation for Principal Component Analysis
Test linear combinations of parameters of a linear model
Computing Multiple Student Tests
GSA analysis
Generalized version of setdiff for n objects
Function to perform a Multiple Factor Analysis.
Plot the expression profiles of the probes corresponding to given probesets
Run Gene Ontology analysis based on hypergeometric test from a probeset list
Computing Differential Analysis for each gene
Generalized version of intersect for n objects
Barplot of component inertia percentage for PCA
Run KEGG pathway analysis based on hypergeometric test from a probeset list
Sample representation for Principal Component Analysis
Partial Least Squares
Function to create a txt and pdf report with the main statistics
and graphics of the MFA.
Computes distances on a data matrix
Multiple testing correction using FWER
FDR.BH
EMA - Easy Microarray Analysis
Correlation between Genes collection and Genes Array
Annotation of probesets using biomaRt
Convert labels to colors